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Repeat masking
BuildDatabase
RepeatModeler
Filter RepeatModeler Library
Combine Repeat Libraries
RepeatMasker
TRF
Virtualisation
Whole genome alignment
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Repeat masking
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Repeat masking
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Contents:
BuildDatabase
Program parameters
Typical usage
Gridengine wrapper
RepeatModeler
Program parameters
Typical usage
Gridengine wrapper
qsub command
parallel qsub command
Footnotes
Filter RepeatModeler Library
Filtering steps
Grid engine wrapper
Combine Repeat Libraries
RepeatMasker
Typical Usage
Gridengine wrapper
qsub command
useful one-liners
TRF
Program parameters
Program outputs
Grid engine wrapper
qsub command
parallel command
References
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