Repeat masking

Contents:

• BuildDatabase
  • Program parameters
  • Typical usage
  • Gridengine wrapper
• RepeatModeler
  • Program parameters
  • Typical usage
  • Gridengine wrapper
  • qsub command
  • parallel qsub command
  • Footnotes
• Filter RepeatModeler Library
  • Filtering steps
  • Grid engine wrapper
• Combine Repeat Libraries
• RepeatMasker
  • Typical Usage
  • Gridengine wrapper
  • qsub command
  • useful one-liners
• TRF
  • Program parameters
  • Program outputs
  • Grid engine wrapper
  • qsub command
  • parallel command
  • References