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  • Repeat masking
    • BuildDatabase
    • RepeatModeler
    • Filter RepeatModeler Library
    • Combine Repeat Libraries
    • RepeatMasker
    • TRF
  • Virtualisation
  • Whole genome alignment
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Repeat maskingΒΆ

Contents:

  • BuildDatabase
    • Program parameters
    • Typical usage
    • Gridengine wrapper
  • RepeatModeler
    • Program parameters
    • Typical usage
    • Gridengine wrapper
    • qsub command
    • parallel qsub command
    • Footnotes
  • Filter RepeatModeler Library
    • Filtering steps
    • Grid engine wrapper
  • Combine Repeat Libraries
  • RepeatMasker
    • Typical Usage
    • Gridengine wrapper
    • qsub command
    • useful one-liners
  • TRF
    • Program parameters
    • Program outputs
    • Grid engine wrapper
    • qsub command
    • parallel command
    • References
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© Copyright 2016, Blaxter Lab, University of Edinburgh. Revision 3d81c050.

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