Wrapper around makeblastdb to format blast databases for use with RepeatModeler.
-name <database name> The name of the database to create. -engine <engine name> The name of the search engine we are using. I.e abblast/wublast or ncbi (rmblast version). -dir <directory> The name of a directory containing fasta files to be processed. The files are recognized by their suffix. Only *.fa and *.fasta files are processed. -batch <file> The name of a file which contains the names of fasta files to process. The files names are listed one per line and should be fully qualified.
/exports/software/repeatmodeler/RepeatModeler/BuildDatabase -engine ncbi -name mydb seq.fa