BuildDatabase¶
Wrapper around makeblastdb to format blast databases for use with RepeatModeler.
Program parameters¶
-name <database name>
The name of the database to create.
-engine <engine name>
The name of the search engine we are using. I.e abblast/wublast or
ncbi (rmblast version).
-dir <directory>
The name of a directory containing fasta files to be processed. The
files are recognized by their suffix. Only *.fa and *.fasta files
are processed.
-batch <file>
The name of a file which contains the names of fasta files to
process. The files names are listed one per line and should be fully
qualified.
Typical usage¶
/exports/software/repeatmodeler/RepeatModeler/BuildDatabase -engine ncbi -name mydb seq.fa
Gridengine wrapper¶
See RepeatModeler.